Ontology Data Sources
8 OWL/Turtle ontologies used to construct the knowledge graph
Construction Pipeline (Alternative Method)
OWL/TTL Files
→
SPARQL Parser
→
Triple Extraction
→
Entity Resolution
→
Graph Build
→
BioKG
Source Ontologies
HGNC
hgnc.owlHuman Gene Nomenclature Committee
Standardized human gene symbols and names
8 nodes contributed
OGG
ogg-merged.owlOntology of Genes & Genomes
Biological ontology for genes and genomes
8 nodes contributed
MONDO
mondo-simple.owlMondo Disease Ontology
Unified cross-species disease ontology
6 nodes contributed
NBO
nbo.owlNeuro Behaviour Ontology
Human and animal behavioral ontology
6 nodes contributed
HENEGEO
HENEGEO_v1_0.owlHead & Neck Cancer Geo Ontology
Cancer treatment and clinical ontology
5 nodes contributed
NPO
npo.ttlNeuron Phenotype Ontology
Neuron type classification ontology
6 nodes contributed
NIGO
NIGO_vv1.owlNeurological Imaging Gene Ontology
Gene-imaging-neurological links
2 nodes contributed
AIO
aio-full.owlArtificial Intelligence Ontology
Deep learning networks and AI models
0 nodes contributed
📂
Select an ontology to inspect its contribution
Relationship Types (16)
associated_with
Statistical or biological association
6 edges
driver_mutation
Gene drives disease pathogenesis
2 edges
treats
Drug-disease therapeutic relationship
5 edges
targets
Drug acts on gene/protein target
2 edges
participates_in
Entity is part of pathway/process
2 edges
mediated_by
Behavior mediated by neuron type
2 edges
has_phenotype
Entity exhibits phenotypic trait
2 edges
is_site_of
Anatomical site of disease
2 edges
dysregulated_in
Pathway abnormal in disease
3 edges
interacts_with
Molecular interaction
1 edges
activates
Activation relationship
2 edges
inhibits
Inhibitory relationship
2 edges
regulates
Regulatory relationship
2 edges
causes
Causal relationship
1 edges
expressed_in
Gene expression in tissue
1 edges
modulates
Drug modulates gene activity
2 edges